User Guide# Installation container (preferred) pip conda Quickstart Generate a container Docker Singularity Minify a Docker container Command-line Interface neurodocker neurodocker generate neurodocker generate docker neurodocker generate singularity neurodocker minify Examples FSL Docker AFNI Docker FreeSurfer Docker ANTS SPM Miniconda Nipype tutorial Docker Common Uses Create locally and use remotely Working with Data Jupyter Notebook Multiple Conda Environments Minify Containers Minify image with ANTs Templates and Renderers Add software to Neurodocker Example specification Known Issues