Neurodocker
We recommend using the Neurodocker Docker image, which can be access through Docker or Singularity.
docker run --rm repronim/neurodocker:0.7.0 --help
singularity run docker://repronim/neurodocker:0.7.0 --help
Neurodocker can also be installed with pip. This is useful if you want to use the Neurodocker Python API. We recommend to installing in a virtual environment.
pip
python -m pip install neurodocker neurodocker --help
Neurodocker can also be installed in a conda environment (using pip).
conda
conda create -n neurodocker python pyyaml conda activate neurodocker python -m pip install neurodocker neurodocker --help