Installation

container (preferred)

We recommend using the Neurodocker Docker image, which can be access through Docker or Singularity.

docker run --rm repronim/neurodocker:0.7.0 --help
singularity run docker://repronim/neurodocker:0.7.0 --help

pip

Neurodocker can also be installed with pip. This is useful if you want to use the Neurodocker Python API. We recommend to installing in a virtual environment.

python -m pip install neurodocker
neurodocker --help

conda

Neurodocker can also be installed in a conda environment (using pip).

conda create -n neurodocker python pyyaml
conda activate neurodocker
python -m pip install neurodocker
neurodocker --help